on El Capitan download PeptideShaker vers. 1.16.39 (.app)

Main category - Education
Sub category - Science
Developer - CompOmics
Filesize - 113357
Title - PeptideShaker


https://macpkg.icu/?id=61024&s=4portfolio&kw=V.1.16.39.PeptideShaker.ZIP V.1.16.39.PeptideShaker.ZIP

LIBRARY UPDATE: Updated xtandem parser to version 1.7.18.
BUG FIX: The progress dialog now shows the actual progress when loading a FASTA file.
BUG FIX: Fixed a bug with the hiding and reshowing of the spectrum panel in the Overview tab.
Download Count: 15
What kind of MaxQuant files are recommended for a PX Submission?
An algorithm for the assignment of phosphorylation sites in peptides is described. The program uses tandem mass spectrometry data in conjunction with the respective peptide sequences to calculate site probabilities for all potential phosphorylation sites. Tandem mass spectra from synthetic phosphopeptides were used for optimization of the scoring parameters employing all commonly used fragmentation techniques. Calculation of probabilities was adapted to the different fragmentation methods and to the maximum mass deviation of the analysis. The software includes a novel approach to peak extraction, required for matching experimental data to the theoretical values of all isoforms, by defining individual peak depths for the different regions of the tandem mass spectrum. Mixtures of synthetic phosphopeptides were used to validate the program by calculation of its false localization rate versus site probability cutoff characteristic. Notably, the empirical obtained precision was higher than indicated by the applied probability cutoff. In addition, the performance of the algorithm was compared to existing approaches to site localization such as Ascore. In order to assess the practical applicability of the algorithm to large data sets, phosphopeptides from a biological sample were analyzed, localizing more than 3000 nonredundant phosphorylation sites. Finally, the results obtained for the different fragmentation methods and localization tools were compared and discussed.
Site:
Sierra https://macpkg.icu/?id=61024&kw=ihodmv-v-3.16.39-peptideshaker.pkg (133761 KB)
Best! version https://macpkg.icu/?id=61024&kw=v.1.16.43-PeptideShaker-88K.app (126959 KB)


Key list PeptideShaker
HJL0-HO8N-GT7K-I10W
MHOA-TS6I-LR2V-RM95
Z9U7-N7Y0-LRS9-FEQN
IYBG-LGG6-Q5KA-IK1C


Operating System: Windows XP / 2003 / Vista / 2008 / 7 / 8, Mac OS Intel 10.5 / 10.6 / 10.7 / 10.8 PKG Installers: Installation Wizards Like On Windows Fractions: inspect from which fractions proteins and peptides are likely to come from. FEATURE IMPROVEMENT: Sped up the peptide to protein mapping. platform for creating MS/MS data analysis workflows using scripts [13] GlycoMod calculates isotopic fine structure (with bindings for C, Python and R) BUG FIX: Fixed a bug that occurred if the user typed in the name of a file to load and the file was not found.

(91819 KB) Free tmVh version 1.17.39 PeptideShaker 1.16.40 French version
(109956 KB) Torrent PeptideShaker v 1.16.41 gwc 1.16.42 Updated OS X
(98620 KB) Free PeptideShaker v 1.16.41 gmsjwv 1.18.39 iMac
(95219 KB) Get Iyh PeptideShaker vers 2.16.39 1.16.41 Language Hindi
(112223 KB) Download 3GT 1.17.39 PeptideShaker 1.19.39 OS X
(108822 KB) Free SOEA PEPTIDESHAKER V.1.19.39 1.16.42 Japanese version
(125826 KB) Download ED25 PEPTIDESHAKER VER 1.17.39 3.16.39 Recomended for 10.14.1

Languages Portuguese Italian Hindi V_1.3.1_IREMIND_ARKB.TAR.GZ (6833 kbytes) 1.2.5
New! version EDGEVIEW_V_1.70_WLU.TAR.GZ (13312 kbytes) 1.61
Updated 10.12 cfFqvf-ver-3.5.1644-TrailRunner-mini.app (5142 kbytes) 3.6.4199
Updated 10.13.4 version_1.85_EdgeView_nZq.pkg (11648 kbytes) 1.59